Proteolysis Forum
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PubMedID Title Journal Author Re updated
23744068Differential Contribution of Insulin and Amino Acids to the mTORC1-Autophagy Pathway in the Liver and Muscle.J Biol Chem, 2013 Jul 19;288(29);21074-81, Naito T, Kuma A, Mizushima N 0 2013/09/07
23930225The ER-Golgi intermediate compartment is a key membrane source for the LC3 lipidation step of autophagosome biogenesis.Elife, 2013;e00947, Ge L, Melville D, Zhang M, Schekman R 0 2013/09/06
23286108Parametric dictionary learning for modeling EAP and ODF in diffusion MRI.Med Image Comput Comput Assist Interv, 2012;15(Pt 3);10-7, Merlet S, Caruyer E, Deriche R 0 2013/09/06
23954414Beclin 2 Functions in Autophagy, Degradation of G Protein-Coupled Receptors, and Metabolism.Cell, 2013 Aug 14; [Epub ahead of print]  0 2013/08/21
23286110Geodesic shape-based averaging.Med Image Comput Comput Assist Interv, 2012;15(Pt 3);26-33, Cardoso MJ, Winston G, ..., Duncan J, Ourselin S 0 2013/08/21
23935533Calpain-6 deficiency promotes skeletal muscle development and regeneration.PLoS Genet, 2013 Aug;9(8);e1003668, Tonami K, Hata S, ..., Kurihara H, Sorimachi H 65535 2013/08/21
23940117Atg18 phosphoregulation controls organellar dynamics by modulating its phosphoinositide-binding activity.J Cell Biol, 2013 Aug 19;202(4);685-98, Tamura N, Oku M, ..., Inagaki F, Sakai Y 0 2013/08/21
22078875Autophagy: renovation of cells and tissues.Cell, 2011 Nov 11;147(4);728-41, Mizushima N, Komatsu M 65535 2013/08/14
23827681OTU Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis.Cell, 2013 Jul 3;154(1);169-84,  0 2013/08/02
23286107Accelerated diffusion spectrum imaging with compressed sensing using adaptive dictionaries.Med Image Comput Comput Assist Interv, 2012;15(Pt 3);1-9, Bilgic B, Setsompop K, ..., Wald LL, Adalsteinsson E 0 2013/07/25
23317502Two deubiquitylases act on mitofusin and regulate mitochondrial fusion along independent pathways.Mol Cell, 2013 Feb 7;49(3);487-98,  0 2013/07/05
23417015End-joining inhibition at telomeres requires the translocase and polySUMO-dependent ubiquitin ligase Uls1.EMBO J, 2013 Mar 20;32(6);805-15, Lescasse R, Pobiega S, Callebaut I, Marcand S 0 2013/07/05
23726910The parallel reaction monitoring method contributes to a highly sensitive polyubiquitin chain quantification.Biochem Biophys Res Commun, 2013 Jun 28;436(2);223-9,  0 2013/07/05
23791384PolyQ Proteins Interfere with Nuclear Degradation of Cytosolic Proteins by Sequestering the Sis1p Chaperone.Cell, 2013 Jun 19; [Epub ahead of print]  0 2013/07/01
23754282Parkin catalyzed ubiquitin-ester transfer is triggered by PINK1-dependent phosphorylation.J Biol Chem, 2013 Jun 10; [Epub ahead of print]Iguchi M, Kujuro Y, ..., Tanaka K, Matsuda N 0 2013/06/30
23354051Central role of E3 ubiquitin ligase MG53 in insulin resistance and metabolic disorders.Nature, 2013 Feb 21;494(7437);375-9, Song R, Peng W, ..., Cao CM, Xiao RP 0 2013/06/18
23727017MITOL Regulates Endoplasmic Reticulum-Mitochondria Contacts via Mitofusin2.Mol Cell, 2013 May 29; [Epub ahead of print]  0 2013/06/04
23453757Cand1 promotes assembly of new SCF complexes through dynamic exchange of F box proteins.Cell, 2013 Mar 28;153(1);206-15,  0 2013/05/10
23452853Regulation of WASH-dependent actin polymerization and protein trafficking by ubiquitination.Cell, 2013 Feb 28;152(5);1051-64,  0 2013/04/26
23453807The E3 Ligase Parkin Maintains Mitochondrial Integrity by Increasing Linear Ubiquitination of NEMO.Mol Cell, 2013 Mar 7;49(5);908-21,  0 2013/04/16
22895187Tumour suppressor RNF43 is a stem-cell E3 ligase that induces endocytosis of Wnt receptors.Nature, 2012 Aug 30;488(7413);665-9, Koo BK, Spit M, ..., Maurice MM, Clevers H 0 2012/12/29
22575959ZNRF3 promotes Wnt receptor turnover in an R-spondin-sensitive manner.Nature, 2012 May 10;485(7397);195-200, Hao HX, Xie Y, ..., Serluca FC, Cong F 0 2012/12/29
23142983Noncanonical recognition and UBL loading of distinct E2s by autophagy-essential Atg7.Nat Struct Mol Biol, 2012 Dec;19(12);1250-6, Yamaguchi M, Matoba K, ..., Noda NN, Inagaki F 0 2012/12/20
23217709The Hairpin-type Tail-Anchored SNARE Syntaxin 17 Targets to Autophagosomes for Fusion with Endosomes/Lysosomes.Cell, 2012 Dec 7;151(6);1256-69,  1 2012/12/13
22682742Structural Insights into Atg10-Mediated Formation of the Autophagy-Essential Atg12-Atg5 Conjugate.Structure, 2012 Jun 6; [Epub ahead of print]Yamaguchi M, Noda NN, ..., Ohsumi Y, Inagaki F 0 2012/06/26
22308378Mitochondrial ubiquitin ligase MITOL blocks S-nitrosylated MAP1B-light chain 1-mediated mitochondrial dysfunction and neuronal cell death.Proc Natl Acad Sci U S A, 2012 Jan 30; [Epub ahead of print]Yonashiro R, Kimijima Y, ..., Inatome R, Yanagi S 0 2012/02/09
22049402Doxorubicin-induced glomerulosclerosis with proteinuria in GFP-GABARAP transgenic mice.Am J Physiol Renal Physiol, 2012 Feb;302(3);F380-9, Takagi-Akiba M, Asanuma K, ..., Ueno T, Tomino Y 0 2012/02/05
22298428The Ankrd 13 family of UIM-bearing proteins regulates EGF receptor endocytosis from the plasma membrane.Mol Biol Cell, 2012 Feb 1; [Epub ahead of print]Tanno H, Yamaguchi T, ..., Ishido S, Komada M 0 2012/02/03
22275429Structures containing Atg9A and the ULK1 complex independently target depolarized mitochondria at initial stages of Parkin-mediated mitophagy.J Cell Sci, 2012 Jan 24; [Epub ahead of print]Itakura E, Kishi-Itakura C, Koyama-Honda I, Mizushima N 0 2012/02/01
22219374Mammalian Atg2 proteins are essential for autophagosome formation and important for regulation of size and distribution of lipid droplets.Mol Biol Cell, 2012 Jan 4; [Epub ahead of print]Velikkakath AK, Nishimura T, ..., Ishihara N, Mizushima N 2 2012/01/26
21966472Yeast methylotrophy and autophagy in a methanol-oscillating environment on growing Arabidopsis thaliana leaves.PLoS One, 2011;6(9);e25257, Kawaguchi K, Yurimoto H, Oku M, Sakai Y 0 2012/01/16
22157017Mitophagy plays an essential role in reducing mitochondrial production of reactive oxygen species and mutation of mitochondrial DNA by maintaining mitochondrial quantity and quality in yeast.J Biol Chem, 2011 Dec 7; [Epub ahead of print]Kurihara Y, Kanki T, ..., Uchiumi T, Kang D 0 2011/12/21
22055191Structural basis of atg8 activation by a homodimeric e1, atg7.Mol Cell, 2011 Nov 4;44(3);462-75, Noda NN, Satoo K, ..., Ohsumi Y, Inagaki F 0 2011/11/11
21839922Selective Autophagy Regulates Insertional Mutagenesis by the Ty1 Retrotransposon in Saccharomyces cerevisiae.Dev Cell, 2011 Aug 16;21(2);358-65, Suzuki K, Morimoto M, Kondo C, Ohsumi Y 0 2011/08/30
21757540Phosphorylation of Ser114 on Atg32 mediates mitophagy.Mol Biol Cell, 2011 Jul 14; [Epub ahead of print]Aoki Y, Kanki T, ..., Uchiumi T, Kang D 0 2011/07/19
21616915Calpain-7 binds to CHMP1B at its second {alpha}-helical region and forms a ternary complex with IST1.J Biochem, 2011 May 25; [Epub ahead of print]Maemoto Y, Osako Y, ..., Shibata H, Maki M 0 2011/05/31
21498569Autophagy-deficient mice develop multiple liver tumors.Genes Dev, 2011 Apr 15;25(8);795-800, Takamura A, Komatsu M, ..., Tanaka K, Mizushima N 0 2011/05/09
21304510The Ufm1-activating enzyme Uba5 is indispensable for erythroid differentiation in mice.Nat Commun, 2011 Feb;181, Tatsumi K, Yamamoto-Mukai H, ..., Yamamoto M, Komatsu M 0 2011/04/15
21454557Parkin mediates proteasome-dependent protein degradation and rupture of the outer mitochondrial membrane.J Biol Chem, 2011 Mar 18; [Epub ahead of print]Yoshii SR, Kishi C, Ishihara N, Mizushima N 0 2011/04/14
21444722Distinct mechanisms of ferritin delivery to lysosomes in iron-depleted and iron-replete cells.Mol Cell Biol, 2011 Mar 28; [Epub ahead of print]Asano T, Komatsu M, ..., Mizushima N, Iwai K 0 2011/04/13
21471734Liver autophagy contributes to the maintenance of blood glucose and amino acid levels.Autophagy, 2011 Jul 1;7(7); [Epub ahead of print]Ezaki J, Matsumoto N, ..., Kominami E, Ueno T 0 2011/04/12
21389113Non-SCF type F-box protein Roy1/Ymr258c interacts with a Rab5-like GTPase Ypt52 and inhibits Ypt52 function.Mol Biol Cell, 2011 Mar 9; [Epub ahead of print]Liu Y, Nakatsukasa K, ..., Mimura S, Kamura T 0 2011/04/11
21406564Calpain-6, a microtubule-stabilizing protein, regulates Rac1 activity and cell motility through interaction with GEF-H1.J Cell Sci, 2011 Apr 15;124(Pt 8);1214-23, Tonami K, Kurihara Y, ..., Sorimachi H, Kurihara H 0 2011/04/04
21338355Calpastatin, an endogenous calpain-inhibitor protein, regulates the cleavage of the Cdk5 activator p35 to p25.J Neurochem, 2011 Feb 21; [Epub ahead of print]Sato K, Minegishi S, ..., Saido TC, Hisanaga SI 0 2011/03/28
21383079OATL1, a novel autophagosome-resident Rab33B-GAP, regulates autophagosomal maturation.J Cell Biol, 2011 Mar 7;192(5);839-53, Itoh T, Kanno E, ..., Waguri S, Fukuda M 0 2011/03/20
21364763Starvation induced cell death in autophagy-defective yeast mutants is caused by mitochondria dysfunction.PLoS One, 2011;6(2);e17412, Suzuki SW, Onodera J, Ohsumi Y 0 2011/03/07
21295580Non-Proteolytic Functions of Calpain-3 in Sarcoplasmic Reticulum in Skeletal Muscles.J Mol Biol, 2011 Feb 3; [Epub ahead of print]Ojima K, Ono Y, ..., Granzier H, Sorimachi H 0 2011/02/28
21333342Crucial role for autophagy in degranulation of mast cells.J Allergy Clin Immunol, 2011 Feb 17; [Epub ahead of print]Ushio H, Ueno T, ..., Okumura K, Nakano H 0 2011/02/25
21173115Proteasome and p97 mediate mitophagy and degradation of mitofusins induced by Parkin.J Cell Biol, 2010 Dec 27;191(7);1367-80, Tanaka A, Cleland MM, ..., Karbowski M, Youle RJ 0 2011/02/11
21264228Mieap, a p53-Inducible Protein, Controls Mitochondrial Quality by Repairing or Eliminating Unhealthy Mitochondria.PLoS One, 2011;6(1);e16060, Kitamura N, Nakamura Y, ..., Ichinose S, Arakawa H 0 2011/01/27
21264221Possible Existence of Lysosome-Like Organella within Mitochondria and Its Role in Mitochondrial Quality Control.PLoS One, 2011;6(1);e16054, Miyamoto Y, Kitamura N, ..., Ichinose S, Arakawa H 0 2011/01/27
21220506p62 targeting to the autophagosome formation site requires self-oligomerization but not LC3 binding.J Cell Biol, 2011 Jan 10;192(1);17-27, Itakura E, Mizushima N 0 2011/01/17
21098295From the Cover: Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution.Proc Natl Acad Sci U S A, 2010 Dec 7;107(49);20992-7, Bohn S, Beck F, ..., Baumeister W, Nickell S 0 2010/12/09
20956561Endocytosis of the Aspartic Acid/Glutamic Acid Transporter Dip5 Is Triggered by Substrate-Dependent Recruitment of the Rsp5 Ubiquitin Ligase via the Arrestin-Like Protein Aly2.Mol Cell Biol, 2010 Dec;30(24);5598-607, Hatakeyama R, Kamiya M, Takahara T, Maeda T 0 2010/11/25
21045113Atg8 regulates vacuolar membrane dynamics in a lipidation-independent manner in Pichia pastoris.J Cell Sci, 2010 Nov 2; [Epub ahead of print]Tamura N, Oku M, Sakai Y 0 2010/11/10
20713601BAG-6 is essential for selective elimination of defective proteasomal substrates.J Cell Biol, 2010 Aug 23;190(4);637-50, Minami R, Hayakawa A, ..., Yokosawa H, Kawahara H 0 2010/11/09
20676083A ribosome-associating factor chaperones tail-anchored membrane proteins.Nature, 2010 Aug 26;466(7310);1120-4, Mariappan M, Li X, ..., Keenan RJ, Hegde RS 0 2010/11/08
20723759ATG12 conjugation to ATG3 regulates mitochondrial homeostasis and cell death.Cell, 2010 Aug 20;142(4);590-600, Radoshevich L, Murrow L, ..., Fung C, Debnath J 0 2010/10/04
20849418Autolytic activity of human calpain?7 is enhanced by ESCRT-III-related protein IST1 through MIT-MIM interaction.FEBS J, 2010 Aug 24; [Epub ahead of print]Osako Y, Maemoto Y, ..., Shibata H, Maki M 0 2010/10/04
20723762Activation of specific apoptotic caspases with an engineered small-molecule-activated protease.Cell, 2010 Aug 20;142(4);637-46, Gray DC, Mahrus S, Wells JA 0 2010/09/23
20833710Contribution of K11-linked ubiquitination to MIR2-mediated MHC class I internalization.J Biol Chem, 2010 Sep 10; [Epub ahead of print]Goto E, Yamanaka Y, ..., Hirano H, Ishido S 0 2010/09/17
20725033Non-canonical inhibition of DNA damage-dependent ubiquitination by OTUB1.Nature, 2010 Aug 19;466(7309);941-6, Nakada S, Tai I, ..., Suda T, Durocher D 2 2010/08/25
20686710Calpain 8/nCL-2 and Calpain 9/nCL-4 Constitute an Active Protease Complex, G-Calpain, Involved in Gastric Mucosal Defense.PLoS Genet, 2010;6(7);e1001040, Hata S, Abe M, ..., Sakimura K, Sorimachi H 0 2010/08/10
20381137Ragulator-Rag complex targets mTORC1 to the lysosomal surface and is necessary for its activation by amino acids.Cell, 2010 Apr 16;141(2);290-303, Sancak Y, Bar-Peled L, ..., Nada S, Sabatini DM 4 2010/08/06
20604804p62/SQSTM1 cooperates with Parkin for perinuclear clustering of depolarized mitochondria.Genes Cells, 2010 Aug;15(8);887-900, Okatsu K, Saisho K, ..., Tanaka K, Matsuda N 0 2010/08/03
20615880Autophagy-related protein (Atg) 8-family interacting motif in Atg3 mediates the Atg3-Atg8 interaction and is crucial for the cytoplasm-to-vacuole targeting pathway.J Biol Chem, 2010 Jul 8; [Epub ahead of print]Yamaguchi M, Noda NN, ..., Ohsumi Y, Inagaki F 0 2010/07/29
20659891Selective transport of alpha-mannosidase by autophagic pathways: structural basis for cargo recognition by ATG19 and ATG34.J Biol Chem, 2010 Jul 21; [Epub ahead of print]Watanabe Y, Noda NN, ..., Ohsumi Y, Inagaki F 0 2010/07/29
20639194Selective transport of alpha-mannosidase by autophagic pathways: identification of a novel receptor, ATG34.J Biol Chem, 2010 Jul 16; [Epub ahead of print]Suzuki K, Kondo C, Morimoto M, Ohsumi Y 1 2010/07/29
20639694Characterization of autophagosome formation site by a hierarchical analysis of mammalian Atg proteins.Autophagy, 2010 Aug 18;6(6); [Epub ahead of print]Itakura E, Mizushima N 2 2010/07/26
20620957Ecm29 fulfils quality control functions in proteasome assembly.Mol Cell, 2010 Jun 25;38(6);879-88, Lehmann A, Niewienda A, ..., Janek K, Enenkel C 0 2010/07/26
20592470Dynamic distribution of muscle-specific calpain in mice has a key role in physical-stress adaptation and is impaired in muscular dystrophy.J Clin Invest, 2010 Jul 1; [Epub ahead of print]  0 2010/07/23
20417603Positive or negative roles of different cyclin-dependent kinase Pho85-cyclin complexes orchestrate induction of autophagy in Saccharomyces cerevisiae.Mol Cell, 2010 Apr 23;38(2);250-64, Yang Z, Geng J, ..., Wang K, Klionsky DJ 0 2010/06/23
20550938C. elegans screen identifies autophagy genes specific to multicellular organisms.Cell, 2010 Jun 11;141(6);1042-55, Tian Y, Li Z, ..., Yu L, Zhang H 0 2010/06/23
20478256Mitochondria supply membranes for autophagosome biogenesis during starvation.Cell, 2010 May 14;141(4);656-67, Hailey DW, Rambold AS, ..., Kim PK, Lippincott-Schwartz J 1 2010/06/23
20516148TRIM8 modulates STAT3 activity through negative regulation of PIAS3.J Cell Sci, 2010 Jun 1; [Epub ahead of print]Okumura F, Matsunaga Y, ..., Nakayama KI, Hatakeyama S 0 2010/06/14
20305637Molecular mechanism of multivesicular body biogenesis by ESCRT complexes.Nature, 2010 Apr 8;464(7290);864-9, Wollert T, Hurley JH 0 2010/06/04
20403326Reconstitution of the RIG-I pathway reveals a signaling role of unanchored polyubiquitin chains in innate immunity.Cell, 2010 Apr 16;141(2);315-30, Zeng W, Sun L, ..., Xu M, Chen ZJ 1 2010/06/02
20460380Skeletal muscle-specific calpain is an intracellular Na+-dependent protease.J Biol Chem, 2010 May 11; [Epub ahead of print]Ono Y, Ojima K, ..., Abe K, Sorimachi H 0 2010/05/31
20237562Skp2 targeting suppresses tumorigenesis by Arf-p53-independent cellular senescence.Nature, 2010 Mar 18;464(7287);374-9, Lin HK, Chen Z, ..., Teruya-Feldstein J, Pandolfi PP 0 2010/05/30
20495530Balanced ubiquitylation and deubiquitylation of Frizzled regulate cellular responsiveness to Wg/Wnt.EMBO J, 2010 May 21; [Epub ahead of print]Mukai A, Yamamoto-Hino M, ..., Komada M, Goto S 0 2010/05/26
20228808Ubiquitin hydrolase Dub3 promotes oncogenic transformation by stabilizing Cdc25A.Nat Cell Biol, 2010 Apr;12(4);400-6, Pereg Y, Liu BY, ..., French DM, Dixit VM 0 2010/05/24
20427287Mammalian Tti1 and Tel2 are critical factors in mTOR complex assembly.J Biol Chem, 2010 Apr 28; [Epub ahead of print]Kaizuka T, Hara T, ..., Natsume T, Mizushima N 0 2010/05/10
20236927Crystal structure of yeast Rpn14, a chaperone of the 19S regulatory particle of the proteasome.J Biol Chem, 2010 Mar 16; [Epub ahead of print]Kim S, Saeki Y, ..., Mizushima T, Kato K 0 2010/05/10
20178748Autophosphorylated CaMKIIalpha acts as a scaffold to recruit proteasomes to dendritic spines.Cell, 2010 Feb 19;140(4);567-78, Bingol B, Wang CF, ..., Peng J, Sheng M 0 2010/05/06
20154084Roles of the lipid-binding motifs of Atg18 and Atg21 in the cytoplasm to vacuole targeting pathway and autophagy.J Biol Chem, 2010 Apr 9;285(15);11476-88, Nair U, Cao Y, Xie Z, Klionsky DJ 0 2010/04/28
20404107PINK1 stabilized by mitochondrial depolarization recruits Parkin to damaged mitochondria and activates latent Parkin for mitophagy.J Cell Biol, 2010 Apr 19;189(2);211-21, Matsuda N, Sato S, ..., Hattori N, Tanaka K 1 2010/04/22
20173742The selective autophagy substrate p62 activates the stress responsive transcription factor Nrf2 through inactivation of Keap1.Nat Cell Biol, 2010 Mar;12(3);213-23, Komatsu M, Kurokawa H, ..., Tanaka K, Yamamoto M 0 2010/04/14
20375281Trs85 directs a Ypt1 GEF, TRAPPIII, to the phagophore to promote autophagy.Proc Natl Acad Sci U S A, 2010 Apr 7; [Epub ahead of print]Lynch-Day MA, Bhandari D, ..., Ferro-Novick S, Klionsky DJ 0 2010/04/13
20026656IKK phosphorylates Huntingtin and targets it for degradation by the proteasome and lysosome.J Cell Biol, 2009 Dec 28;187(7);1083-99, Thompson LM, Aiken CT, ..., Marsh JL, Steffan JS 0 2010/04/05
20144757Methods in mammalian autophagy research.Cell, 2010 Feb 5;140(3);313-26, Mizushima N, Yoshimori T, Levine B 0 2010/04/03
20184884Autophagy.FEBS Lett, 2010 Apr 2;584(7);1279, Mizushima N 0 2010/04/03
19279007Roles of protein-disulfide isomerase-mediated disulfide bond formation of yeast Mnl1p in endoplasmic reticulum-associated degradation.J Biol Chem, 2009 May 1;284(18);11815-25, Sakoh-Nakatogawa M, Nishikawa S, Endo T 0 2010/03/15
20159449Regulation of Rap2A by the ubiquitin ligase Nedd4-1 controls neurite development.Neuron, 2010 Feb 11;65(3);358-72, Kawabe H, Neeb A, ..., Rhee J, Brose N 0 2010/03/13
20159448E3 ligase Nedd4 promotes axon branching by downregulating PTEN.Neuron, 2010 Feb 11;65(3);341-57, Drinjakovic J, Jung H, ..., Dwivedy A, Holt CE 0 2010/03/13
20123978DYRK1A and Glycogen Synthase Kinase 3{beta}, a Dual-Kinase Mechanism Directing Proteasomal Degradation of CRY2 for Circadian Timekeeping.Mol Cell Biol, 2010 Apr;30(7);1757-68, Kurabayashi N, Hirota T, ..., Sanada K, Fukada Y 0 2010/03/12
20156962Unconventional secretion of Pichia pastoris Acb1 is dependent on GRASP protein, peroxisomal functions, and autophagosome formation.J Cell Biol, 2010 Feb 15; [Epub ahead of print]Manjithaya R, Anjard C, Loomis WF, Subramani S 3 2010/03/04
20098416PINK1/Parkin-mediated mitophagy is dependent on VDAC1 and p62/SQSTM1.Nat Cell Biol, 2010 Feb;12(2);119-31, Geisler S, Holmstrom KM, ..., Kahle PJ, Springer W 0 2010/03/02
20147545Reevaluation of Neurodegeneration in lurcher Mice: Constitutive Ion Fluxes Cause Cell Death with, Not by, Autophagy.J Neurosci, 2010 Feb 10;30(6);2177-87, Nishiyama J, Matsuda K, ..., Mizushima N, Yuzaki M 0 2010/02/15
20061387Proteasome assembly influences interaction with ubiquitinated proteins and shuttle-factors.J Biol Chem, 2010 Jan 8; [Epub ahead of print]Chandra A, Chen L, Liang H, Madura K 0 2010/02/13
20065092The conserved oligomeric Golgi complex is involved in double-membrane vesicle formation during autophagy.J Cell Biol, 2010 Jan 11;188(1);101-14, Yen WL, Shintani T, ..., Baba M, Klionsky DJ 1 2010/02/12
20139071Cul8/Rtt101 forms a variety of protein complexes that regulate DNA damage response and transcriptional silencing.J Biol Chem, 2010 Feb 4; [Epub ahead of print]Mimura S, Yamaguchi T, ..., Obuse C, Kamura T 0 2010/02/12
19956254Detection of sequential polyubiquitylation on a millisecond timescale.Nature, 2009 Dec 3;462(7273);615-9, Pierce NW, Kleiger G, Shan SO, Deshaies RJ 0 2010/02/11
20010695Antagonism of Beclin 1-dependent autophagy by BCL-2 at the endoplasmic reticulum requires NAF-1.EMBO J, 2010 Feb 3;29(3);606-18, Chang NC, Nguyen M, Germain M, Shore GC 0 2010/02/10
20045355Thymoproteasome Shapes Immunocompetent Repertoire of CD8(+) T Cells.Immunity, 2009 Dec 30; [Epub ahead of print]Nitta T, Murata S, ..., Tanaka K, Takahama Y 0 2010/02/09
20023420Defective autophagy associated with LC3 puncta in epothilone-resistant cancer cells.Cell Cycle, 2010 Jan 15;9(2);377-83, Shen S, Kepp O, ..., Pierron G, Kroemer G 0 2010/02/08
19793721Defective autophagy in neurons and astrocytes from mice deficient in PI(3,5)P2.Hum Mol Genet, 2009 Dec 15;18(24);4868-78, Ferguson CJ, Lenk GM, Meisler MH 0 2010/02/08
20093466The genetic landscape of a cell.Science, 2010 Jan 22;327(5964);425-31, Costanzo M, Baryshnikova A, ..., Andrews BJ, Boone C 0 2010/02/04
20018847A novel type of E3-ligase for the Ufm1-conjugation system.J Biol Chem, 2009 Dec 14; [Epub ahead of print]Tatsumi K, Sou YS, ..., Tanaka K, Komatsu M 0 2009/12/21
19749745Listeria monocytogenes ActA-mediated escape from autophagic recognition.Nat Cell Biol, 2009 Oct;11(10);1233-40, Yoshikawa Y, Ogawa M, ..., Chakraborty T, Sasakawa C 0 2009/11/25
19773385Autophagy negatively regulates cell death by controlling NPR1-dependent salicylic acid signaling during senescence and the innate immune response in Arabidopsis.Plant Cell, 2009 Sep;21(9);2914-27, Yoshimoto K, Jikumaru Y, ..., Ohsumi Y, Shirasu K 0 2009/11/22
19910927SCF(Dia2) regulates DNA replication forks during S-phase in budding yeast.EMBO J, 2009 Nov 12; [Epub ahead of print]Mimura S, Komata M, ..., Shirahige K, Kamura T 0 2009/11/18
19671920Specific iron chelators determine the route of ferritin degradation.Blood, 2009 Aug 11; [Epub ahead of print]De Domenico I, Ward DM, Kaplan J 0 2009/11/15
19783656Differencial involvement of ATG16L1 in Crohn's disease and canonical autophagy: analysis of the organization of the ATG16L1 complex in fibroblasts.J Biol Chem, 2009 Sep 25; [Epub ahead of print]Fujita N, Saitoh T, ..., Noda T, Yoshimori T 0 2009/11/14
19889643The dimeric coiled-coil structure of Saccharomyces cerevisiae ATG16 and its functional significance in autophagy.J Biol Chem, 2009 Nov 4; [Epub ahead of print]Fujioka Y, Noda NN, ..., Ohsumi Y, Inagaki F 1 2009/11/14
19778961Autophagy-deficient Schizosaccharomyces pombe mutants undergo partial sporulation during nitrogen starvation.Microbiology, 2009 Sep 24; [Epub ahead of print]Mukaiyama H, Kajiwara S, ..., Nakamura T, Takegawa K 1 2009/11/10
19549169Lag-phase autophagy in the methylotrophic yeast Pichia pastoris.Genes Cells, 2009 Jul;14(7);861-70, Yamashita S, Yurimoto H, ..., Oku M, Sakai Y 0 2009/11/10
19793921A Genomic Screen for Yeast Mutants Defective in Selective Mitochondria Autophagy.Mol Biol Cell, 2009 Sep 30; [Epub ahead of print]Kanki T, Wang K, ..., Yen WL, Klionsky DJ 0 2009/11/09
19550147Autophagic degradation of nuclear components in mammalian cells.Autophagy, 2009 Aug;5(6);795-804, Park YE, Hayashi YK, ..., Nonaka I, Nishino I 0 2009/11/09
19625776Knockdown of autophagy-related gene decreases the production of infectious hepatitis C virus particles.Autophagy, 2009 Oct;5(7);937-45, Tanida I, Fukasawa M, ..., Wakita T, Hanada K 0 2009/11/09
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19763088A longevity protein, Lag2, interacts with SCF complex and regulates SCF function.EMBO J, 2009 Sep 17; [Epub ahead of print]Liu Y, Mimura S, Kishi T, Kamura T 0 2009/09/22
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19339967Autophagy regulates lipid metabolism.Nature, 2009 Apr 30;458(7242);1131-5, Singh R, Kaushik S, ..., Cuervo AM, Czaja MJ 0 2009/05/12
19345187Acetylation targets mutant huntingtin to autophagosomes for degradation.Cell, 2009 Apr 3;137(1);60-72, Jeong H, Then F, ..., Yamamoto A, Krainc D 0 2009/05/11
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19203578The RIDDLE syndrome protein mediates a ubiquitin-dependent signaling cascade at sites of DNA damage.Cell, 2009 Feb 6;136(3);420-34, Stewart GS, Panier S, ..., Taylor AM, Durocher D 0 2009/02/27
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19150980An ATP-competitive mTOR inhibitor reveals rapamycin-insensitive functions of mTORC1.J Biol Chem, 2009 Jan 15; [Epub ahead of print]Thoreen CC, Kang SA, ..., Sabatini DM, Gray NS 2 2009/02/12
19136968Involvement of linear polyubiquitylation of NEMO in NF-kappaB activation.Nat Cell Biol, 2009 Feb;11(2);123-32, Tokunaga F, Sakata S, ..., Tanaka K, Iwai K 0 2009/02/09
19167332SEPA-1 Mediates the Specific Recognition and Degradation of P Granule Components by Autophagy in C. elegans.Cell, 2009 Jan 23;136(2);308-21, Zhang Y, Yan L, ..., Miao L, Zhang H 0 2009/01/28
18722006Global sequencing of proteolytic cleavage sites in apoptosis by specific labeling of protein N termini.Cell, 2008 Sep 5;134(5);866-76, Mahrus S, Trinidad JC, ..., Burlingame AL, Wells JA 0 2009/01/14
19117993BRCA1-associated protein 1 interferes with BRCA1/BARD1 RING heterodimer activity.Cancer Res, 2009 Jan 1;69(1);111-9, Nishikawa H, Wu W, ..., Fukuda M, Ohta T 0 2009/01/08
19088090Homeodomain-interacting protein kinases (Hipks) promote Wnt/Wg signaling through stabilization of {beta}-catenin/Arm and stimulation of target gene expression.Development, 2009 Jan;136(2);241-51, Lee W, Swarup S, ..., Ishitani T, Verheyen EM 0 2009/01/07
19119233Regulation of neuronal survival factor MEF2D by chaperone-mediated autophagy.Science, 2009 Jan 2;323(5910);124-7, Yang Q, She H, ..., Shacka JJ, Mao Z 0 2009/01/07
18832610Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis.Science, 2008 Nov 14;322(5904);1104-7, Pearce MJ, Mintseris J, ..., Gygi SP, Darwin KH 0 2008/12/15
19050071Identification of Barkor as a mammalian autophagy-specific factor for Beclin 1 and class III phosphatidylinositol 3-kinase.Proc Natl Acad Sci U S A, 2008 Dec 2; [Epub ahead of print]Sun Q, Fan W, ..., Chen S, Zhong Q 0 2008/12/05
19029340Parkin is recruited selectively to impaired mitochondria and promotes their autophagy.J Cell Biol, 2008 Nov 24; [Epub ahead of print]Narendra D, Tanaka A, Suen DF, Youle RJ 3 2008/12/04
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19020622Concerted multi-pronged attack by calpastatin to occlude the catalytic cleft of heterodimeric calpains.Nature, 2008 Nov 20;456(7220);404-408, Moldoveanu T, Gehring K, Green DR 1 2008/11/30
19020623Calcium-bound structure of calpain and its mechanism of inhibition by calpastatin.Nature, 2008 Nov 20;456(7220);409-12, Hanna RA, Campbell RL, Davies PL 0 2008/11/29
18757741Cancer related mutations in NRF2 impair its recognition by Keap1-Cul3 E3 ligase and promote malignancy.Proc Natl Acad Sci U S A, 2008 Sep 9;105(36);13568-73, Shibata T, Ohta T, ..., Yamamoto M, Hirohashi S 0 2008/11/24
18829864Self-Interaction Is Critical for Atg9 Transport and Function at the Phagophore Assembly Site during Autophagy.Mol Biol Cell, 2008 Oct 1; [Epub ahead of print]He C, Baba M, Cao Y, Klionsky DJ 1 2008/11/19
18948269RalA functions as an indispensable signal mediator for nutrient sensing system.J Biol Chem, 2008 Oct 23; [Epub ahead of print]Maehama T, Tanaka M, ..., Kanaho Y, Hanada K 0 2008/11/18
18716223Wnt regulates axon behavior through changes in microtubule growth directionality: a new role for adenomatous polyposis coli.J Neurosci, 2008 Aug 20;28(34);8644-54, Purro SA, Ciani L, ..., Siomou E, Salinas PC 0 2008/11/14
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18353967Ubiquitin-proteasome-dependent degradation of a mitofusin, a critical regulator of mitochondrial fusion.Mol Biol Cell, 2008 Jun;19(6);2457-64, Cohen MM, Leboucher GP, ..., Glickman MH, Weissman AM 0 2008/10/31
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18843052Beclin 1 Forms Two Distinct Phosphatidylinositol 3-Kinase Complexes with Mammalian Atg14 and UVRAG.Mol Biol Cell, 2008 Oct 8; [Epub ahead of print]Itakura E, Kishi C, Inoue K, Mizushima N 4 2008/10/23
0;  1 2008/10/21
18849965Loss of the autophagy protein Atg16L1 enhances endotoxin-induced IL-1beta production.Nature, 2008 Oct 5; [Epub ahead of print]Saitoh T, Fujita N, ..., Yoshimori T, Akira S 0 2008/10/20
18818209Mitophagy in yeast occurs through a selective mechanism.J Biol Chem, 2008 Sep 25; [Epub ahead of print]Kanki T, Klionsky DJ 0 2008/10/20
18662542Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes.Cell, 2008 Jul 25;134(2);268-78, Lee I, Schindelin H 0 2008/10/14
18756251Misfolded proteins partition between two distinct quality control compartments.Nature, 2008 Aug 28;454(7208);1088-95, Kaganovich D, Kopito R, Frydman J 0 2008/10/02
18818692Cdk5 phosphorylates Cdh1 and modulates cyclin B1 stability in excitotoxicity.EMBO J, 2008 Sep 25; [Epub ahead of print]Maestre C, Delgado-Esteban M, ..., Bolanos JP, Almeida A 0 2008/10/01
18768753The Atg8 Conjugation System Is Indispensable for Proper Development of Autophagic Isolation Membranes in Mice.Mol Biol Cell, 2008 Sep 3; [Epub ahead of print]Sou YS, Waguri S, ..., Tanaka K, Komatsu M 0 2008/09/30
18768752An Atg4B Mutant Hampers the Lipidation of LC3 Paralogues and Causes Defects in Autophagosome Closure.Mol Biol Cell, 2008 Sep 3; [Epub ahead of print]Fujita N, Hayashi M, ..., Noda T, Yoshimori T 0 2008/09/29
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18691969Ubc9 sumoylation regulates SUMO target discrimination.Mol Cell, 2008 Aug 8;31(3);371-82, Knipscheer P, Flotho A, ..., Sixma TK, Pichler A 0 2008/09/04
18701681Depletion of 26S proteasomes in mouse brain neurons causes neurodegeneration and Lewy-like inclusions resembling human pale bodies.J Neurosci, 2008 Aug 13;28(33);8189-98, Bedford L, Hay D, ..., Lowe J, Mayer RJ 0 2008/09/01
18701704Piecemeal Microautophagy of the Nucleus Requires the Core Macroautophagy Genes.Mol Biol Cell, 2008 Aug 13; [Epub ahead of print]Krick R, Muehe Y, ..., Goldfarb DS, Thumm M 0 2008/08/29
18485871Epigenetic control of rDNA loci in response to intracellular energy status.Cell, 2008 May 16;133(4);627-39, Murayama A, Ohmori K, ..., Shimizu T, Yanagisawa J 0 2008/08/25
18625846Quantitative analysis of autophagy-related protein stoichiometry by fluorescence microscopy.J Cell Biol, 2008 Jul 14;182(1);129-40, Geng J, Baba M, Nair U, Klionsky DJ 1 2008/08/20
18701890Autophagy in thymic epithelium shapes the T-cell repertoire and is essential for tolerance.Nature, 2008 Aug 13; [Epub ahead of print]Nedjic J, Aichinger M, ..., Mizushima N, Klein L 0 2008/08/19
18508918Atg8 Controls Phagophore Expansion during Autophagosome Formation.Mol Biol Cell, 2008 Aug;19(8);3290-8, Xie Z, Nair U, Klionsky DJ 0 2008/08/19
18508924Ubc4/5 and c-Cbl Continue to Ubiquitinate EGF Receptor after Internalization to Facilitate Polyubiquitination and Degradation.Mol Biol Cell, 2008 May 28; [Epub ahead of print]Umebayashi K, Stenmark H, Yoshimori T 0 2008/07/30
18550769The C-terminal PAL motif and transmembrane domain 9 of presenilin 1 are involved in the formation of the catalytic pore of the gamma-secretase.J Neurosci, 2008 Jun 11;28(24);6264-71, Sato C, Takagi S, Tomita T, Iwatsubo T 0 2008/07/18
18570871JNK1-mediated phosphorylation of Bcl-2 regulates starvation-induced autophagy.Mol Cell, 2008 Jun 20;30(6);678-88, Wei Y, Pattingre S, ..., Bassik M, Levine B 2 2008/07/15
17767160T helper type 2 differentiation and intracellular trafficking of the interleukin 4 receptor-alpha subunit controlled by the Rac activator Dock2.Nat Immunol, 2007 Oct;8(10);1067-75, Tanaka Y, Hamano S, ..., Sasazuki T, Fukui Y 0 2008/07/12
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18187572Inhibition of autophagy prevents hippocampal pyramidal neuron death after hypoxic-ischemic injury.Am J Pathol, 2008 Feb;172(2);454-69, Koike M, Shibata M, ..., Tanaka K, Uchiyama Y 0 2008/07/08
184451Environmental influences on pituitary-adrenal system function.Probl Actuels Endocrinol Nutr, 1975;55-62, Bohus B 0 2008/07/08
18258863Synaptic protein degradation underlies destabilization of retrieved fear memory.Science, 2008 Feb 29;319(5867);1253-6, Lee SH, Choi JH, ..., Kim H, Kaang BK 0 2008/07/08
18591426Involvement of autophagy in trypsinogen activation within the pancreatic acinar cells.J Cell Biol, 2008 Jun 30;181(7);1065-72, Hashimoto D, Ohmuraya M, ..., Mizushima N, Yamamura K 0 2008/07/07
18599786Autophagy Is Essential for Preimplantation Development of Mouse Embryos.Science, 2008 Jul 4;321(5885);117-120, Tsukamoto S, Kuma A, ..., Yamamoto A, Mizushima N 1 2008/07/07
17765686Tumor suppressor CYLD regulates JNK-induced cell death in Drosophila.Dev Cell, 2007 Sep;13(3);446-54, Xue L, Igaki T, ..., Miura M, Xu T 0 2008/07/04
17679695Local initiation of caspase activation in Drosophila salivary gland programmed cell death in vivo.Proc Natl Acad Sci U S A, 2007 Aug 14;104(33);13367-72, Takemoto K, Kuranaga E, ..., Miyawaki A, Miura M 0 2008/07/03
18166655DIAP2 functions as a mechanism-based regulator of drICE that contributes to the caspase activity threshold in living cells.J Cell Biol, 2007 Dec 31;179(7);1467-80, Ribeiro PS, Kuranaga E, ..., Miura M, Meier P 0 2008/07/03
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